Test if individuals are heterozygous at the csd locus

Source: R/Functions_L0_auxilary.R

Level 0 function that returns if individuals of a population are heterozygous at the csd locus. See SimParamBee for more information about the csd locus.

isCsdHeterozygous(pop, simParamBee = NULL)

Arguments

pop

Pop-class

simParamBee

SimParamBee, global simulation parameters

Value

logical

Details

We could expand isCsdHeterozygous to work also with Colony-class and MultiColony-class if needed

Examples

founderGenomes <- quickHaplo(nInd = 8, nChr = 1, segSites = 100)
SP <- SimParamBee$new(founderGenomes)
SP$nThreads = 1L
basePop <- createVirginQueens(founderGenomes)
#> Error in get(x = "SP", envir = .GlobalEnv): object 'SP' not found

drones <- createDrones(x = basePop[1], nInd = 1000)
#> Error in get(x = "SP", envir = .GlobalEnv): object 'SP' not found
droneGroups <- pullDroneGroupsFromDCA(drones, n = 10, nDrones = nFathersPoisson)
#> Error in get(x = "SP", envir = .GlobalEnv): object 'SP' not found

# Create a Colony class
colony <- createColony(x = basePop[2])
#> Error in get(x = "SP", envir = .GlobalEnv): object 'SP' not found
colony <- cross(colony, drones = droneGroups[[1]])
#> Error in get(x = "SP", envir = .GlobalEnv): object 'SP' not found
colony <- buildUp(x = colony, nWorkers = 6, nDrones = 3)
#> Error in get(x = "SP", envir = .GlobalEnv): object 'SP' not found
colony <- addVirginQueens(x = colony, nInd = 4)
#> Error in get(x = "SP", envir = .GlobalEnv): object 'SP' not found

# Use isCsdHeterozygous on a Population
isCsdHeterozygous(getQueen(colony))
#> Error in get(x = "SP", envir = .GlobalEnv): object 'SP' not found
isCsdHeterozygous(getWorkers(colony))
#> Error in get(x = "SP", envir = .GlobalEnv): object 'SP' not found